Author:Amarda Shehu

Publications
Analysis of AlphaFold2 for Modeling Structures of Wildtype and Variant Protein Sequences Anowarul Kabir, Toki Inan and Amarda Shehu In:Proceedings of 14th International Conference on Bioinformatics and Computational Biology
Guiding Protein Conformation Sampling with Conformation Space Maps Ahmed Bin Zaman, Kenneth De Jong and Amarda Shehu In:Proceedings of 14th International Conference on Bioinformatics and Computational Biology
Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition Manpriya Dua, Daniel Barbara and Amarda Shehu In:Proceedings of the 12th International Conference on Bioinformatics and Computational Biology
From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures Fardina Alam and Amarda Shehu In:Proceedings of the 12th International Conference on Bioinformatics and Computational Biology
Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics Kazi Lutful Kabir, Nasrin Akhter and Amarda Shehu In:Proceedings of 11th International Conference on Bioinformatics and Computational Biology
Equipping Decoy Generation Algorithms for Template-free Protein Structure Prediction with Maps of the Protein Conformation Space Ahmed Bin Zaman and Amarda Shehu In:Proceedings of 11th International Conference on Bioinformatics and Computational Biology

Keyphrases

AlphaFold2, antimicrobial peptide recognition, conformation sampling, Convolution Layer, Decoy generation, decoy quality, deep learning, energy landscape, evolutionary algorithm², Markov state models, molecular structural dynamics, multi-instance learning, Optimization, protein conformation, protein structure prediction, protein tertiary structure², recurrent layer, structure quality analysis, template-free protein structure prediction, unsupervised learning.