Volume •Abstracts •Preface •Authors •Keywords •BibTex Entries

WCB10: Volume Information

WCB10. Workshop on Constraint Based Methods for Bioinformatics

Editors: Agostino Dovier, Alessandro Dal Palù and Sebastian Will

EPiC Series in Computing•Volume 4

10 articles•82 pages•Published: May 15, 2012

Papers

Constraint-Based Modeling in Systems Biology

Alexander Bockmayr

1

Building Portfolios for the Protein Structure Prediction Problem

Alejandro Arbelaez, Youssef Hamadi and Michèle Sebag

2-7

Maximum likelihood pedigree reconstruction using integer programming

8-19

Geometric Constraints for the Phase Problem in X-Ray Crystallography

Corinna Heldt and Alexander Bockmayr

20-26

Optimal haplotype reconstruction in half-sib families

Aurélie Favier, Jean-Michel Elsen, Simon de Givry and Andrés Legarra

27-37

Finding Minimal Reaction Sets in Large Metabolic Pathways

Takehide Soh and Katsumi Inoue

38-52

Alignnment of RNA with Structures of Unlimited Complexity

Alessandro Dal Palù, Mathias Möhl and Sebastian Will

53-58

Perspectives on Constraints, Process Algebras, and Hybrid Systems

Luca Bortolussi and Alberto Policriti

59-66

Lattice model refinement of protein structures

Martin Mann and Alessandro Dal Palù

67-74

Minimizing enzymes to diferenciate between species

David Buezas, Joao Almeida and Pedro Barahona

75-82

Keyphrases

0-1 integer programming, algorithm selection, Bayesian networks, Bioinformatics, Constraint Programming², constraints, crossing structure, haplotpes, hybrid systems, integer programming, Lattice Models, machine learning, metabolic pathways, minimal model generation, Pedigrees, propositional formulas, protein structure prediction, Protein Structure Prediction Problem, RNA alignment, SAT solver, Stochastic Concurrent Constraint Programming, systems biology², treewidth, unlimited structure, weighted constraint satisfaction problem, X-ray crystallography.